Tuesday, April 1, 2014

Caitlin's First Post

Hello, my name is Caitlin Kennedy. I am a Sophomore Biology student here at Santa Clara University. Although cancer has not had much of a direct effect on my family, my best friend from childhood's father battled cancer throughout my youth and recently lost his battle a month ago. Smoking cigarettes causes 90% of the cases of lung cancer and this man was always surrounded by a cloud of smoke. While smoking is the largest Cause of Lung Cancer, there are a few other contributors.

Below is a graph showing the risk in men of developing lung cancer based off how many cigarettes they smoke per day.
Figure 1.1: Relative of risk of lung cancer according to duration and intensity of smoking, men
You can access more information about this chart at this website.

I also have been very interested in the HPV shots. When I received the set of three shots, the vaccine was still experimental; I have been curious to what it does/prevents ever since. I would really like to work on this topic specifically during my cancer project. A link explaining the purpose of this series of shots given to children is here.

Brendan's First Post.

Hello this is my first post.  My name is Brendan Burke and I am a junior Biology major.  I am very interested in this cancer biology class because of the impact cancer has had on the people surrounding my life.  Embedded in my blog below is a figure that shows death rates for lung cancer among different age groups.  Death rates for cancer are highest among middle aged and older populations.  This is the first leading cause of cancer death in the United States.
I found this graph from the National Cancer Institute website.

My first post

Hi Everyone,
My name is Abbie Read and I am a junior biology major and biotech and chemistry minor. I am interested in taking this cancer biology class because last summer I interned in Dr. McMahon's lab at UCSF studying a type of lung cancer called non-small cell adenocarcinoma using in vitro and in vivo studies. Starting this summer and carrying through my senior year I will be interning in Dr. Sweet-Cordero's lab at Stanford where the focus is on pediatric oncology but my main project will be looking at chemotherapy resistance in lung cancer. I hope this class will give me a better understanding of cancer as a whole since so far what I have learnt is very focused in on one specific area. A broader look at cancer will help me make connections in my research. I also plan on going to graduate school where I will most likely continue my research in the cancer field. Here is a picture I took last summer of a Hematoxylin and Eosin stain of the airways of a mouse that had lung cancer.


Ramez's First Post

Hello everyone, my name is Ramez and I am a sophomore Biology major. I am interested in studying Cancer Biology due to its impact on people close to me and in order to easily separate reputable scholarly sources from misleading ones. Especially as cancer continues to grow, in both prevalence and popular culture.

For example, a study from The Lancet Oncology predicts that incidences of cancer will increase by 75% within two decades. However, it is obviously difficult to attempt to evaluate and foresee the fluctuating patterns of cancer.


Nicole's First Post

Hi my name is Nicole Mattson and I am a Sophomore Biology major.  I am interested in cancer biology because I have had family members suffer from cancer and I want to make a difference to prevent others from having to go through the same situation.  I would like to better understand the longevity and life cycle of cancer.  More specifically, why some cancers last longer than others and why it is difficult to predict when cancer will cause life threatening problems.   Below is a picture of a long that has been infected with cancer and one that has not been infected.  You can see the differences in the structure of the lungs. I got this picture from this website.

Ellie's Post

Hi!
This is my first post on here.  I am a Junior Public Health Science major.  I'm interested in cancer biology because of the personal impact that cancer has had on me and my family.  I am interested in pursuing cancer research and cancer prevention methods. Embedded is a picture that shows the number of cases of various types of cancer that are attributable to smoking cigarettes.  This graph shows the detrimental affects of smoking and how not smoking is a powerful preventative method.
I found this graph from an article taken from the American Cancer Society's website.

Shiona's First Post

Hello Everyone! My name is Shiona (pronounced Sheena) and I am a sophomore Biology major with a biomedical emphasis. I am interested in the class because many of my family members have been diagnosed with cancer and I would like to know more about what they have been going through and why it is happening. I am particularly interested in lung cancer because it usually has a direct correlation to smoking and has had the greatest impact on my family. I find it so strange that a simple cylinder can cause so much damage. It is truly fascinating how we have all this technology today, yet we seem to be at least one step behind cancer. I am interested to see the new technology that is out there to help us with cancer detection early on.

Joseph's First Post

Hello, my name is Joseph Wojcik and I am currently a Junior majoring in Chemistry and minoring in Mathematics. I am excited to learn about cancer due to the gravity it holds. Many people have felt this weight in some way. I, myself, have felt this several times for both friend and family alike. For some, cancer can be more closely synonymized with death rather than illness. However, the disease itself generally does not evoke such imagery through appearance. Compared to many other diseases, cancer looks relatively benign. While some of the most feared diseases such as the plague are characterized by oozing sores and quick death, cancer can show little to no outward signs and can take years to overwhelm the patient. A cancer patient can look and feel healthy even when the cancer has metastasized to many areas of the body. However, the word cancer carries a degree of weight due to the seeming incurability of the disease. Cancer is enormously hardy and can sometimes withstand or escape current treatment techniques. Even in some of the cases in which it seems to have been completely eliminated, the cancer can still return due to small surviving patches that were missed during treatment. Furthermore, specific types of cancer can require specific therapy in order to be treated most effectively. However, it can be difficult to identify the type of cancer if it has metastasized throughout the body. Nevertheless, new ways of treating and diagnosing cancer are constantly being researched in order better aide patients. Some of the ones I am most interested in involve the utilization of the cancer cell's own biology against it, such as the use of circulating tumor cells in identifying the cancer as well as detecting its progress or relapse.

Monday, March 31, 2014

Erik Christensen's First Post

Hi all,
My name is Erik Christensen and I am a sophomore biology major.  I have no personal experiences with cancer but I have always been fascinated by its incurability, with its many different strains effecting the body in their own way.  I would like to know more about the treatments available and what these treatments do to help limit the growth and/or effects of cancer.  The following figure shows cancer as being the leading cause of death in children 5-24 years of age, and one of the leading causes for children age 1-4.  

This link navigates to the website where the previous image was found and delves into the different types of cancer found in children.  I find it tragic that children are killed by cancer, which makes it more important to work toward prevention and treatment of the disease.

Jennifer's First Post

Hi Everyone!  My name is Jennifer Teruya, and I am a junior Biology major.  I am interested in Cancer Biology because I have many relatives that have been diagnosed with different types of cancer, so I would like to learn more about how cancer works and how it can be diagnosed/ treated/ prevented.  I first became particularly interested in cancer after doing a summer internship in cancer research.  The lab I worked in primarily dealt with research on mesothelioma, which is the cancer of the linings of internal organs, and you can learn more about mesothelioma here.

Braelyn's First Post

Hi, my name is Braelyn and I'm a sophomore Biology major with a Biomedical emphasis and a Chem minor. Im interested in Cancer because Melanoma is very common in my family, and I look forward to learning more about it. This graph shows the numbers of male and female deaths due to skin cancer at different ages.

Michael's First Post

    Hello, my name is Michael Allen and I am a sophomore Biology major here at SCU. I am interested in cancer biology because both my father and grandfather have been affected by cancer. My father had melanoma, and was luckily diagnosed and treated quickly. I am specifically interested in skin cancer because I may also someday be affected by this cancer due to the fact that I have a genetic predisposition for it. I look forward to understanding skin cancer at a higher level, as well as learning how to protect against and treat it.
     Skin cancer is the most common form of cancer in the United States affecting around 2 million people annually. One in five americans will have some form of skin cancer. More general facts about skin cancer are available here. Below are pictures of the different types of skin cancer; melanoma, basal cell skin cancer, and squamous cell skin cancer.

Brittni's First Post

Hi everyone!

My name is Brittni Kam and I'm a Junior Biology major minoring in Public Health Science. This past summer I had the opportunity to intern in the Child Life Department in Honolulu, Hawaii and was given a full insight into the lives of pediatric oncology patients there. Many of them suffered from Leukemia (AML and ALL) and I also met a young 9-year old boy suffering from brain cancer. Working with these kids and their families on a daily basis exposed me not only the medical and biological side of cancer, but also showed me the unfortunate effect that cancer had on these kids; their moods, their schooling, their passions, and of course on their parents and family members. I truly connected with these children, which led me to a passion and dedication for learning more about this complex disease. I hope to go onto pediatric oncology someday so I am very excited about this course!

Sarah's First Post

Hello,

My name is Sarah Katsandres and I am a junior biology major and anthropology minor. I was interested in this course not only because I want to pursue a career in the health care field, but also because of personal interests. I believe that everyone in this class could probably say that they know someone who has been affected by cancer, or is currently battling cancer, which is somewhat of an alarming conjecture. I can name no less than 5 family members who have been diagnosed with some form of cancer during their lifetimes and I know many more family friends who have as well. I am interested in studying the biology of cancer simply because something so common should not seem to be so perplexing to scientists and oncologists and to the average person, yet it is. Cancer has always been such a large and overpowering mystery. It represents so many different ailments yet just the name itself is universally known. It touches all corners of the human population, along with other organisms. I am attracted to learning about cancer because no matter how extensively you study even the smallest aspect of it, you will never know everything. It fascinates me that we, as scientists and as ordinary people, have just barely begun to handle the issue of cancer and its effects on the population. The anthropology-enthusiast in me would find great satisfaction in sorting fact from fiction and learning more about the responses to cancer globally, including different cultures' treatments of, views on, and reactions to the true "emperor of all maladies," to use Siddhartha Mukherjee's perfect title.

Tien's First Post

Hello everybody! My name is Tien Lu and I am a sophomore biology major. I am interested in cancer biology because I have lost loved ones to to breast cancer and I want to learn more of the diseases that affect so many lives today.


Antonio's First Post

           Hi everyone, I am Antonio Salas, a sophomore biology major student. I am interested in cancer biology because cancer has plagued the human race for thousands of years and because cancer is a unique group of diseases that I do not know much about, despite its abundant presence in contemporary society. By the end of this class, I hope to become enlightened on the biological processes that surround the life cycle of cancer because cancer is truly an enigma to me.
           According to the American Cancer Society, Men suffer from prostate cancer the most out of all of the cancer diseases. On the other hand, women suffer from breast cancer the most out of all types of cancers. I can infer from this that men are most prone to prostate cancer while women are most susceptible to breast cancer. The figure below depicts the site of cancer (breast cancer is shown in pink while prostate cancer is shown in purple) that is most prominent in males (shown in the top map) and females (show in the bottom map) globally.


Michelle's First Post

Hi everyone! My name is Michelle Fat and I am interested in taking Cancer Biology with you all because I do not have much knowledge on the subject and I would like to develop a solid foundation from which I may build off of in the future.

Here is a photo regarding cancer that I found on Wikipedia:


Shreshtha's First Post

Hi all, my name is Shreshtha Wadhwa and I am a sophomore biology major. Cancer Biology is my first upper division cell/molecular biology class and the reason I have chosen this class in particular is because I want to study in depth the underlying mechanisms, learn about the treatment/prevention options, and the extent to which this group of diseases that have plagued and claimed the lives of so many people in our world can be "cured", if at all. Although there will continue to be more incidents and cases of cancer in all segments of the population - adults, children, and adolescents - in the coming decades because cancer doesn't discriminate, I hope that this class can help me to demystify the information surrounding this very important subject matter. Attached is a chart depicting the estimated number of new cancer cases and deaths by sex in 2014 in the US (American Cancer Society, Cancer Facts & Figures 2014). What can be noted from the data is that men are more likely to develop and die of cancer than women overall and in comparison across most sites of the body, which makes me wonder why such a gap exists.




Lauren's First Post

HI!

   I am Lauren Ducote. I am pursuing a double major in Public Health and Biology. This course peaked my interest because cancer has effected many of us personally. I hope to gain insight into a disease that causes fear and trepidation upon it's diagnosis. A scientific introduction to the biology of cancer will provide a more analytical perspective when viewing this disease.
    The National Cancer Institute has reported that since the mid-1970's a significant increase in 5-year survival rate for all cancers has occurred due to advances in diagnostics. Although, incidence has increased possibly due to the improvements in diagnostics and screening. The advances described in this article provide a sense of optimism that the diagnosis of cancer in the future will not be met with trepidation. The bimodal graph below curtesy of the National Cancer Institutes Bulletin demonstrates the trend:
Go Broncos with optimism!

Christina's First Post

Hello, I am Christina Wood and I am a senior biology major! I am super excited to take Bio 179 because after graduation I am going to be working in a lab researching cancer genomics. I know many family members and friends who have battled various forms of cancer, and I look forward to better understanding the disease so that I can make a difference in what a positive cancer diagnosis means to an individual's quality of life.

Last quarter I was introduced to the following program; this is a link to the informational pamphlet given to participants of a very interesting Breast Cancer Data Set being collected in Norway. All women between the ages of 50 and 69 are given free mammograms every two years. The overall goal in this is to detect breast cancer early and gather information pertaining to the onset of breast cancer. This is a huge data set that continues to this day!
From Norwegian Breast Cancer Pamphlet

My First Post

This is my first post. I am really excited to take this Cancer Bio class. I think it is such an interesting topic that affects many.
I find the science behind it to be so fascinating and I am thinking that I would like to continue to study to work as a cancer researcher in the future. There is still so much to learn about cancers and uncovering some of its mysteries would be amazing.
The women's crew team is working with a woman who's brother died of thyroid cancer recently and ThyCa to raise awareness. I'm excited to take what we are learning and apply it to what I learn about this organization and the cancer itself.

Megan's First Post

Hey guys my name is Megan Carlson and I am a senior biology major at SCU. I am really excited for this class because breast cancer and pancreatic cancer have impacted the lives of many of my loved ones and I am eager to learn about the disease that they coped with.

I attached a pie chart showing the proportion of deaths due to cancer in the US in 2009, showing just how large of an impact it had then and has only gotten worse now.



Sunday, March 30, 2014

This post is a test.


This is a test to show how easy it easy to blog. Her is a link to the wiki. Go there now.


Tuesday, June 12, 2012

Geographical Distribution as a Risk Factor

http://www.sciencephoto.com/image/294898/530wm/M8500432-Cervical_cancer_cell,_SEM-SPL.jpg
While my partner and I were researching HPV related cervical cancers and trying to see if there was a geographical factor that contributed positively or negatively, I came across an article about a study done in Jingan County, China that specifically focused on this question.

The study took a group of women from different terrains and by excluding the known factors that increase the risk of cervical cancer were able to monitor the geographical influence on cancer.



Cancer Causes Death...But It's Not What You Think


            Obviously cancer is deadly.  It is a disease that attacks the cells in our body and creates mutations that make its own cells immortal, but is dying from cancer the only worry that cancer patients should have?  Based on the article, Non-cancer mortality among people diagnosed with cancer, we see a trend in the deaths of cancer patients versus non-cancer patients, and notice that the higher death rate among people with cancer is not always necessarily due to cancer.  So why do cancer patients have a much higher chance of dying from a non-cancer related mortality?  What does this say about lifestyles, health related issues, and even psychological aspects of the disease?

Monday, June 11, 2012

Forks Over Knives Part 2: Examining the Validity of Scientific Studies

In the beginning, Dr. Islas gave us a short list of lifestyle changes that could be made to combat or slow the onset of cancer. Wear sunscreen. Exercise. Avoid smoking. Eat Healthy.  In a 2011 American documentary directed by Lee Fulkerson, this idea of eating healthy as a means to combat degenerative diseases and reverse the growth of cancerous cells is explored through promotion of a “Whole Foods Plant Based Diet” while simultaneously reviewing the works of American physician Caldwell Esselstyn and professor of nutritional biochemistry T. Colin Campbell, two of the most prominent advocates for the diet in America. (You may remember this from the blog post “Forks Over Knives: How a Whole Foods Plant Based Diet Can Cure You”).
 
In response to the documentary, I asked for the general thoughts and opinions of the class on the evidence presented and if you would consider the whole foods plant based diet. Well, since I did not note a significant rise in veganism on campus I would venture to guess that most of you still do not think of milk protein as a carcinogen and animal based proteins are still a staple in the majority of your diets, skeptical of the claims that a whole foods plant based diet can cure all ailments and prevent cancer. You are justified in your skepticism.

Saturday, June 9, 2012

Go Ahead, Eat Me...Oh but Wait...Don't Eat Me! said the Cancer Cell (Revised)

In a 2010 article from Stanford School of Medicine, research lead by Mark Chao and Ravindra Majet details interesting insight into the machinations of cancer cells. The researchers and their team discovered that many cancer cells actually carry the wellspring of their own ruination, this is in the form of a protein, calreticulin (CRT), an 'eat me' signal on the cell surface of cancer cells that signals circulating immune cells to engulf and digest them. So how come cancer cells are not destroyed efficiently by microphages? Now this is where it starts to get interesting, get this, cancer being the genius that it is also produces separate 'don't eat' me signals in the form of CD47 proteins on cancer cell surfaces creating a process that works to counteract the 'eat me' (CRT) signals.

Can an Anxious Heart lead to Cancer (revised).

Who knew an anxious heart could have a link to cancer?
Over the winter break I browsed through a book entitled, Healing Begins with the Sanctification of the Heart by Dr. Strydom, a Zimbabwean lady who got her training and qualification to be a medical doctor in South Africa. Dr. Strydom, in her insightful book discusses how anxiety and stress can be detrimental to one's health. According to her research, stages 2 & 3 of stress (contributors to prolonged stress) cause excessive production of stress hormones in the human body including ACTH- 'the fear hormone' and cortisol. Cortisol in excessive amounts kills T cells of the immune system, and when this happens T & B cells go out of balance and B cells become overactive and begin to produce excessive antibodies, this then means that the immune system no longer functions efficiently and that the individual in question becomes more susceptible to attack by bacteria and viruses. I would like to venture further and hypothesize that knowing what we previously learnt in lecture about some viruses causing cancer, I believe that anxiety can indirectly lead to cancer via the transformation of viruses and v-oncogenes which are not destroyed by the immune system. Furthermore, we know that one of the hallmarks of cancer involves evading immune system destruction (Hanahan, Weinberg), therefore, in this case, if the immune system is already down or functioning at a less than efficient level, cancer cells may just better thrive in such an environment because a weak immune system won't be able to efficiently ward off viruses and cancer cells.

Re-educating Tumor-Associated Macrophages

In an article published in 2008, Thorsten Hagemann and his fellow researchers identified a method to change tumor-associated macrophages (TAMs) into cytotoxic macrophages, which would then be able to target tumor cells as do normal MI macrophages.
Adoptive transfer of IKKβ-targeted TAMs inhibits tumor growth in vivo. Iluminescence imaging shows the amount of TAMs as a result of no treatment or treatment with dominant-negative inhibitor of IKKβ.

Oncogene Amnesia and Addiction

Is anyone else working on the papers about Oncogene Addiction and Oncogene Amnesia. I would like to initiate a 'discussion' online about the paper. Let me know if you are interested!

Targeting Tumor Associated Macrophages

Figure 6(A) Elimination of TAMs results in
a reduction in tumor angiogenesis (1)

In our cancer project "Host Immune System Enhancing Tumor Growth" as you may recall we went over an interesting immunotherapy experiment in which targeted tumor associated macrophages (TAMS) were destroyed by targeting legumain to identify target molecules. Here I will take a more in-depth analysis of this experiment to better understand it's pros and cons.



Friday, June 8, 2012

Curry Spice Can Kill Cancer Cells?

 


In an article by the BBC, researchers discovered the chemical curcumin (found in the curry spice, turmeric) could help kill oesophageal cancer (cancer of the esophagus) cells. The rate of oesophageal cancer has gone up by more than a half since the 1970s as a result of rising rates of obesity, alcohol intake and reflux disease, according to the researchers at the Cancer Research facility in the UK, and curcumin might be a viable treatment. A team at the Cork Cancer Research Centre in the UK found that curcumin induced "apoptosis-independent death" in oesophageal cancer cells.




The Mutations Cancer Avoids

As a final blog, I came across something interesting on the internet. Usually we equate cancer proliferation with a mutation that results in a loss of function and the cell begins to replicate uncontrollably. However, a study published online today showed that while nuclear DNA of cancer cells has many mutations, the same is not the case for mitochodrial DNA (here). In fact, the scientists found that colorectal cancer cells has three times fewer new mutations than normal colon cells. The type of mutations found in normal colon cells were typical mutations in response to oxidative damage: C:G to T:A transitions. When you consider that cancer cells rely more on anaerobic glycolysis for energy as opposed to oxidative phosphorylation, the contrast becomes clearer. The scientists speculate that with fewer mutations, the cancer cell mitochondria function better, thus the cancer cells have a better metabolism and can live longer, if not forever.

The Ethics of Genomics

Quick Blog: I wanted to take a departure from the complicated science and assess the progress of genomics as it relates to cancer diagnostics/therapy. If you read the countless blogs from the entire quarter, it is evident that scientists are able to study cancer on a molecular level and essentially map cancer risk based on genome sequencing. As much as this technology will pioneer breakthrough treatments, it also begs the question, "how far is too far?" In an article published online Wednesday, it was announced that the fetal genome can be determined from a maternal blood sample and a paternal saliva sample. In the theme of genomics and the possibility it provides, here is some food for thought:


  • Could genomics potentially dissuade couples from reproducing?
    • If genetic screening becomes universally accessible, many couples may choose to learn of the risks that they may be subjecting their offspring to. 
  • Should there be legal statutes against reproducing if a couple knows that their offspring has a heightened risk of cancer or any other disease?
  • What impact will genetic screening have on abortion legislation?
  • Is genetic sequencing bestowing an extra element of worry or a gift of knowledge?

Lynch Syndrome: When the Molecular Cleaning Ladies Stop Working.


Lynch Syndrome; 

When the Molecular Cleaning Ladies Stop Working.


A few week ago my mom went to the SGNA (Society of Gastrointestinal Nurses and Associates) conference in Arizona. While there she attended lecture on hereditary colon cancer by Dr. Larry J. Geier, the director of the Genetic Risk Evaluation and Testing (GREAT) program. She told me about what a great lecture it was and I was able to get ahold of his lecture slides and contacted him about his sources. As his lecture focused on Lynch Syndrome, I'll be using, Dr. Wendy Kohlmann's review on LynchSyndrome, his primary source on the subject from his lecture.

Lynch syndrome is an autosomal dominant genetic syndrome that effects approximately 1 in every 350 people. There are numerous mutations that cause Lynch syndrome and interestingly they can appear in any one of 5 recognized genes; MLH1, MSH2, MSH6, PMS2, and EPCAM. The first four genes are involved in the mismatch repair process. This is to say that they repair nucleotides that have been incorrectly paired during DNA replication. The last one, EPCAM, is special and I'll get to it soon. The MLH1, MSH2 and PMS2 protein product all bind together to for the Mismatch Repair Complex that actively binds to mismatched nucleotide bases and matches them correctly. The MSH6 protein product has more of a support function in the overall process. A detrimental mutation need only exist in one of the genes in order to significantly reduce the function of the overall complex. When this happens, the Mismatch Repair Complex is incapable of adequately repairing the mismatches between DNA replications. As a result, in the following DNA replication when the DNA helix spits and replicates, one of the daughter cells will have mutation where the unfixed mismatch appeared. Over time and many DNA replications, mutations accumulate. Each mutation occurs randomly, but follows the “bull's eye theory” (ie. If I throw enough darts, eventually I'll hit a bull's eye).


Figure 1. Microsatellite instability testing is used to identify tumors caused by defective mismatch repair by comparing the number of nucleotide repeats in a panel ofmicrosatellite markers in normal tissue with the number from tumor tissue from the same individual. Microsatellite stability (MSS) is present if the same number of repeats is present in each marker in both the tumor and the normal tissue. Microsatellite instability (MSI) is present if the number of repeats in the tumor and the normal tissue differs
.

As I wrote about early, the WNT pathway in the cell plays a major role in tumorigenesis in adenocarcinoma of the colon. If a mutation occurs within any protein in the Axin-TCF-APC complex protein genes (as is often the case in adenocarcinoma of the colon resulting from Lynch syndrome), then B-catenin goes under-regulated within the cell, complexes with TCF and promotes the oncogene c-MYC, which leads to the synthesis of Cyclin A and Cyclin E, the activation of CDK2 and CDK4, and the suppression of P27. As we learned in class the actication of the Cyclins A and E and CDK's 2 and 4 promote the movement of the cell into and through S-phase of the cell cycle, essentially causing the cell to proliferate. Since this mutation will remain in the cell in the subsequent daughter cells, there will be a continuous over-expression of c-myc leading to continuous over proliferation of the cell as seen in Familial Adenomatous Polyposis (FAP). Essentially, simply by providing a stream of unfixed de novo mutations, Lynch Syndrome can create a novel incidence of Familial Adenomatous Polyposis (FAP) within an epithelial mucous cell of the colon. Naturally, the mutation could also take place in the promoter or early exons of the c-MYC gene that would cause it to be expressed more readily. As long as the mutation occurs somewhere within the WNT pathway and leads to the over-expression of the c-myc gene, the end result will be polyposis.

Next comes EPCAM, which I personally find amusing. EPCAM isn't a Mismatch Repair protein. The reason it's involved with the functioning of Mismatch Repair Genes is because it sits just upstream of one on the chromosome. I find Dr. MatthiasKloor's study on EPCAM expression in Lynch Syndrome better explainsthe proposed mechanism. As it happens, deletions in the EPCAM gene in the 3' exon a and coincidentally need the promoters of the MSH2 Mismatch Repair Gene, can cause a problems with the functionality of the promoter, such that MSH2 is simply read through without expression. The molecular mechanism isn't very clear, but I believe that the deletion either causes a histone binding site or stop/start codon top blend in with the neighbor's nearby genetic code. Essentially, a deletion in it's upstream neighbor's gene effectively silences MSH2. This opens a lot of doors for possible gene interactions in adenocarcinoma of the colon and more. As only one fifth of the adenocarcinoma of the colon attributed to genetic risk factors have genetic risk factors that we can identify, we can now see that germline mutations in some genes can be caused by nearby genes in the genome that aren't normally mechanistically associated with the genes that are being silenced more mutated. I believe the saying, “there goes the neighborhood” rather effectively summarizes EPCAM's effect on MSH2 and by extension the Mismatch Repair pathway and resulting cancers.

A question I'm sure everyone has is, why Lynch only causes adenocarcinoma of the colon when its mutations are random? It doesn't. Lynch causes increased risk of a number of differenct cancers. Adenocarcinoma of the colon simply happens to be the premiere example of cancers it causes as it raises the probability of formation of 5% to ~80% and it happens to be my subject matter.

The question I have is; how was an oncogene as powerful as c-CYM be moderated by medice. The gene is essentially an on/off switch for cancer. It cascades into such a wide variety of proto-oncogenes and oncogenes that over-activation of it practically guarantees you'll develop cancer. It's like the Lynch pin (pun intended) and pressure point of cell proliferation. All molecular roads in adenocarcinom lead to and through the c-MYC gene. If we could learn to properly moderate it expression, then we could prevent the grand majority of colon cancer.

Sources
  1. Kohlmann, Wendy; Gruber, MS; Gruber, Stephen B (2011). Lynch Syndrome. 2004 Feb 5 [Updated 2011 Aug 11]. In: Pagon RA, Bird TD, Dolan CR, et al., editors. GeneReviews™ [Internet]. Seattle (WA): University of Washington, Seattle; 1993-.
  2. Kloor, Matthias; Voigt, Anita Y; et. All (2011). Analysis of EPCAM Protein Expression in Diagnostics of Lynch Syndrome. Journal of Clinical Oncology, 29(2):223-7.

Give Up the Bacon (Or Eat Less)

To change things up, this blog post will focus more on the social aspects of cancer rather than the molecular basis of the disease. Specifically, I want to discuss the consumption of red meat and the growing body of evidence linking it to cancer. 

So at the beginning of class, Dr. Islas tried to convince us to make lifestyle changes that would reduce our risk of developing cancer. He suggested that we always wear long sleeve shirts and pants (especially during the summer!) and especially for us to avoid eating meats that were BBQed.

I am guessing that many of you, even with ten weeks of cancer biology under your belts, are not going to make such drastic lifestyle changes. Odds are we will continue to wear our swimsuits and we will probably continue to eat meat.

All of this made me wonder about our threshold for behavioral trade-offs. In other words, how high must the risk for cancer be before we make dramatic changes in the way we live? For many of us, we are willing to tan outside, but are unwilling to even venture into a tanning booth. But what about changes in our diet? One major difference between tanning and diet is that how we eat has generally been indoctrinated in us from a very young age. As a result, changing eating habits can be much more difficult.  For those of us that have always been told that eating fatty foods such as McDonald's or KFC is unhealthy, avoiding fast food isn't hard.  But this is normally the case with red meat. Based on my personal experience and other anecdotal evidence, a majority of individuals believe that meat is a healthy part of diet. There is the belief that red meat is the best source of protein.

Although I know it is unlikely,  my hope is to persuade some of you to reduce your consumption of red meat. It may not be easy, but research is showing over and over again that carcinogenic effects of red meat.


Detecting Cancer by MSP

 
MSP (methylation-specific PCR) detects hyper and hypo methylation of genes through a bisulfite modification. As a review CpG island promoters that are methylated are silenced. Cancerous cells are usually observed to have hypermethylation of genes that result in silenced tumor suppressor genes. Usually, the hypermethylation is due to an excess expression of DNA methyltranserase which are responsible for methylating the promoters by attaching a methyl group to a cytosine base. Rather than using traditional restriction enzymes to cleave distinguish methylated from unmethylated DNA for PCR, MSP (Methylation specific PCR) modifies DNA with sodium bisulfate which converts all unmethylated cytosines to uracil (8). The sodium bisulfate does not affect methylated cytosines, allowing clear distinct comparisons of methylated vs unmethylated DNA.


Epigentic Therapy

epigenetics.jpg


DNA methylation as a biomarker to detect and assess tumor growth is only one part of the cancer equation. New studies show the active role of epigenetic changes in development of a treatment of cancer. Traditionally, clinic treatments involve radiation, surgery or drug poisoning. The introduction of a class of drugs that target some proteins in the cancer pathway seems promising. These drugs are referred as "epi-drugs" in a study done by Juergens and colleages (11). Epi-drugs target the DNA methylation machinery such as inhibiting DNA methyltransferases (DNMTi). By interfering with the methylation, some cancer tumor suppressor genes will not be silenced, thus a epigenetic therapy. The patients whose specific genes were unmethylated responded well to traditional therapies such as radiation after the epigenetic therapy. The demethylation of those genes made the cancerous cells more susceptible to chemotherapy.

Eating Healthy; One of the Best Treatments for Genetic Predispositions to Adenocarcinomas

I came across a study rather similar to one of the examples Dr. Chernikova shared with us in her lecture; the one concerning the effects of a healthy diet on breast cancer occurrence in mice. There are, however, a two key difference between the study Dr. Cherikova bright up and this study, done by Dr. Volker Mai. First, instead of correlating dietary habits in mice to breast cancer, Mai looked into adenocarcinomas of the gastrointestinal track. Second, all of the mice within this study were bred to be carriers of APCMIN, which give them the mouse equivalent of Familial Adenomatous Polyposis (FAP). I wrote early on FAP, but the short story is that, in humans, its genetic disorder that results in hundreds to thousands of polyps in the colon and intestines due to a mutation in the APC gene that leads to over-expression of the WNT pathway.

Mai tested mice within four treatment conditions. Aside from the control group which was fed normal pellets, one group was given a diet with a calorie restriction 40% below the control, one was given a high fat diet, and the last a diet high in olive oil and supplemented with freeze-dried fruits and vegetable extracts with a total calorie count similar to that of the high fat diet. After nine weeks on the diets, necropsies were performed on all the mice. The results are nicely summarized below in Figure 1.


Figure 1. Mean (± SE) polyp numbers in ApcMin mice after 9 weeks of dietary treatment. Total polyps (▪), total polyps > 2 mm (□), colon polyps (▨). Control (n = 30); Calorie-restricted (CR) [n= 28; P versus control (total polyps) <0.0001]; Supplemented (OFV) [n = 30; P versus control (total polyps) = 0.04]; and High fat (HF) = high corn oil [n = 14; P versus control (total polyps) = 0.5].

As you can see above, there are significant differences in the numbers of total polyps (black bars) per mouse in each treatment group. The calorie restricted (CR) diet and the supplemented diet (OFV) obviously both resulted in notably lower average polyp counts than the control and high fat (HF) diets. This trend hold when the count is restricted only to polyps greater than 2mm in length, though the relative range has decreased notably. Once restricted to solely colon polyps, the results become too close to be considered significant.

Ignoring the colon-specific results, diet appears to be a firm factor in the formation of adenomas. The 40% restricted diet resulted in 57% fewer polyps on average relative to the control (P < 0.05). It's important to note that this reduction was not great enough to result in malnutrition. This large of a contrast is rather self explanatory. If these results hold true in follow up studies and carry over to humans, then calorie restriction definitely a viable means of deterring polyp formation in carriers of Familial Adenomatous Polyposis (FAP) and very possibly the numerous other genetic disorders characterized by increased risk of adenocarcinoma.

The high fat (HF) diet, while having accrued the highest average number of polyps, was not significantly larger than the control (P = 0.5). The supplemented diet (OVF), however, resulted in 33% fewer polyps on average (P = 0.04), which marks it as another viable dietary option in deterring polyp formation. With the supplimented diet, however, the best comparison that can be made is to the high fat diet as it as the overall calorieintake, food mass and % kilocalories from fat are close in both these treatments, the difference in polyp count can be attributed to the nutritional difference between the two diets. No r-value is available for this comparison, but there does seem to be a significant difference between the two diets. This suggests that in lieu of calorie restriction, people partaking of a high fat diet can simply change the contents of their diet without having to restrict calories and deter polyp formation to a significant degree.

The fact that these mice carry the equivalent of Familial Adenomatous Polyposis in humans makes the result especially promising. Given the sheer quantity in which polyps form in the colon and intestines of these patients, a 33-57% decrease in polyps can easily equate to thousands of prevented polyps over a lifetime. Such a deterrent could easily grant these patients years of additional time before the disease either overwhelms them or they're forced to undergo a colectomy (removal of the colon) as is commonly the case and results in numerous digestion complications. Furthermore, calorie-restricted and nutritionally-supplemented diets are relatively cheap means of preventing polyp formation.

Despite the strength of the overall results, personally, I initially found these results rather disappointing. As my topic revolves around andenocarcinoma of the colon, it was frustrating to find such clear distinctive results from the total polyp count while the results from only the colon came out to be statistically insignificant. The problem is how low the average number of colon polyps per mouse is. With each treatment group containing only 14-15 mice and the average colon polyp count in each group landing well below 0.5 polyps per mouse, significant results would be nigh impossible to achieve.

In addition to a larger test group, the study would have needed to extend beyond nine weeks in order to allow colon polyps more time to form and grow. Unfortunately, this probably isn't a viable option. Given how aggressively polyps formed within the small intestine during these nine weeks, any significant increase in the length of the experiment would probably prove sufficiently long enough for the polyps in the small intestine to kill off a significant number of mice in the control and high fat diet treatment groups. Possibly, by using a different animal model, significant results on the colon alone could be produced. However, despite the statistically insignificance of the colon-only data, the functionality of the formation of adenocarcinoma in the small intestines is highly comparable to that of the large intestines, so the the overall results are at least indicative of a possible trend in the colon as well.

We've got to chill out - hakuna mata!

We have all heard that stressing about things doesn't really get us anywhere. When we freak out about taking tests or completing projects it doesn't really matter how much we work or study because in the end we end up affecting our performance by psyching ourselves out. I'm sure that at some point in our college experience we all can relate to a moment in which we had such a high level of stress that we can no longer compute a single train of thought. Ring a bell? I'm sure it does, especially when finals are approaching fast and furiously. Interestingly, some schools are aware of the negative effect that stress has on academic performance and overall mental integrity of students. Because of this, they are implementing an innovative technique to help students release stress through the presence of puppies. You read correctly, puppies are now the answer to our stress! Currently, schools around the nation are using the "Dogs on Campus" approach, where students are able to interact with puppies, that are part of a social training program to become companion dogs, as a way to break away from  their stressful studies. For instance, in Harvard Medical School and Yale Law school, therapy dogs are now held in libraries and are capable of being rented by students, especially during finals. The reasoning behind this unique stress relief technique applied by these schools is that they have seen a positive correlation between the mental state of students and the time they spend interacting with the dogs. Research on this matter suggests that the interaction with pets decreases the levels of cortisol, a primary stress hormone, and increases hormones such as endorphins, which have been associated with the increase of happiness to levels in which students can perform normally as their stress levels return to optimal levels.

So how does stress have such a potent effect in our body, and how can we neutralize it when no canine love is available?

Thursday, June 7, 2012

CD95/CD95L Application to Tissue Grafts


      My cancer presentation delved into discovering the role of CD95/CD95L in tumor counterattack and the validity of such an escape mechanism. While researching this mechanism I came across an older paper that suggested future studies in this area may be able to apply CD95/CD95L to increasing the stressfulness of tissue grafts. So I got onto google and searched to see if this mechanism had been applied to tissue grafts yet, and sure enough there is an ongoing effort to utilize cancer's trickery to aid the medical community. Here are the results of my research, but first, some background information on CD95/CD95L, allogeneic immune response and the current therapies used to treat side effects of tissue grafts.

Background:
       CD95/CD95L is a ligand and receptor set typically used by T-cells to induce apoptosis in pathogens or non-self cells. Here is a simplified version of how this system works.
    

Education in conjunction with consistent Screening and Treatment= Reduced Incidences of HPV-related Cervical Cancer in Developing Nations?

Introduction:
My partner Kayla Ehring and I are studying viruses and how they lead to cancer. Particularly, our focus has been on the HPV virus and its link to cervical cancer, especially in developing countries.

Case studies:
 
I recently stumbled upon a 2010 study entitled, Examining attitudes about HPV and cervical cancer risk among female clinic attendees in Johannesburg, South Africa. It got me thinking about possible solutions to solve this sad development in developing nations, especially those in Africa, a place very close to my heart.
 In the 2010 study  it is revealed that developing countries account for up to 85% of the approximate 500,000 cases per year of cervical cancer globally. Approximately 250,000 of these deaths occur in Sub Saharan Africa, South Asia and Latin America. One suggested cause for the high rates of cervical cancer in developing countries may be attributed to the lack of efficient methods of screening for and treating HPV and cervical cancer. 
According to the WHO, cervical cancer is treatable, but many women in developing countries do not have access to effective screening programs, thus explaining the high incidences of cancer in developing countries. Furthermore, according to studies published by the NIH in 2001, incidences of cervical cancer are so high in developing countries primarily because of the lack of effective screening programs aimed at detecting and then treating precancerous conditions. In  the study, an estimated 5% of females in developing countries had been screened for cervical dysplasia in 5 sequential years, where as in developed nations at least 40%-50% of the women had been screened for cervical dysplasia. 
Furthermore, while developing nations do offer pap smear services, in many cases, these tests are only available to a small number of women, via private health care. In short lack of technology, lack of follow up diagnostics and treatments are largely to blame for the high incidences and prevalence of cervical cancer in developing nations. The graph below graphically represents this point very well.
 


Figure 2


Furthermore, in the  2010 study in South Africa, 86 women aged 18-44 with at least one offspring, were enlisted to take part in a survey which aimed to understand the attitudes and knowledge women in South Africa had about HPV, cervical cancer and the HPV vaccine. The results reflected that a significant portion of the participants were not familiar with HPV, the vaccine and cervical cancer, they were however concerned about the risk to both them and their offspring of acquiring HPV and cervical cancer. The study also reflected the fact that many of these women faced barriers towards receiving screening for cervical cancer but were willing to get their offspring vaccinated. This study reflects the need for education in developing nations such as South Africa about HPV, how it is contracted and how it can lead to cancer. Such invaluable knowledge could offer a major break through in terms of reducing incidences of cervical cancer in the developing nations.
Below is a sample of some of the results from the survey and study:
Womens' knowledge about HPV:


Table 1:Sample interview and results on HPV
Question
Participants’ response
C1. Have you ever heard of HPV infection
29% (n = 86) yes
C2. HPV is a sexually transmitted disease/infection
79% answered true
C3. There is no cure for HPV but it can be controlled
33% answered true
C4. Having HPV puts one at risk for cervical cancer
67% answered true
C5. HPV is an infection that only affects women
17% answered false
C6. HPV is spread through sexual contact
71% answered true
C7. Condoms offer some protection from HPV
75% answered true

Werner Syndrome: Aging in Fast Forward


Let’s face it: Nobody likes to age.  The thought of growing old makes most cringe and scramble to find a miracle cure to halt this process.  Skin care companies make fortunes selling wrinkle creams to make women look ten years younger, hair dyes are sold right and left to get rid of those gray hairs, and Botox has become almost a common procedure in America.  The only thing worse than getting old and wrinkly?  Doing it at an increased rate.  Werner Syndrome is a form of adult progeria, characterized by premature aging, and it is no surprise that telomeres have everything to do with it.

Wednesday, June 6, 2012

The Link Between Socioeconomic Status and Cancer

In class we’ve discussed many aspects of cancer. Some of these had to do with the most prevalent types of cancer in the United States, the survival rates, treatments, cancer risks, and many other related topics. There is one possible related risk factor which we did not discuss: socioeconomic status of the patient. In an article titled, Impact of Socioeconomic Status on cancer incidence and stage at diagnosis, scientists explore the relationship between socioeconomic status and cancer incidence. Combining data from the Surveillance, Epidemiology, and End Results (SEER) Program at the National Cancer Institute, a population-based cancer registry, and the US representative National Longitudinal Mortality Study (NLMS), which provides self-reported demographic and socioeconomic data, researchers were able to examine the connection between the two.

Tuesday, June 5, 2012

I'm not crazy: Thioridazine really does target cancer stem cells


Research has shown that the drug, Thioridazine, an antipsychotic drug normally used to treat Schizophrenia, may also be used as a targeted treatment for cancer.  While Thioridazine killed a precursor to leukemia cells, it did not harm the normal cells – the ultimate goal with all cancer treatment.  By targeting only the leukemia cells, thioridazine has the potential to permanently eradicate them, such that a secondary tumor never forms.

Monday, June 4, 2012

Metformin and Radiation Therapy


           The pancreatic cancer presentation last week discussed the drug Metformin, which is one of the most widely used drugs in type 2 diabetes treatment.  The presenter mentioned it interestingly has anti-growth effects.  I decided to investigate this drug further in the context of cancer and found this study.  These researchers tested the effects of Metformin on MCF-7 human breast cancer cells and FSaII mouse fibrosarcoma cells.  The results suggest that Metformin can cause a significant amount of clonogenic cancer cell death.  Even more stunning is that the drug was preferentially cytotoxic to cancer stem cells (CSCs) relative to non-cancer stem cells.  Also, these researchers investigated the effect of Metformin on cancer cells being treated with ionizing radiation and found that it increased the radiosensitivity of the cells.  In effect, the Metformin “helped” the radiation kill the cancer cells.  This idea is very similar to my comments at the end of my presentation last Friday in which I mentioned the possibility that drugs taken in combination with traditional therapies could increase the desired effect against cancer cells while decreasing the negative effects on normal cells.  This study provides some compelling initial evidence in support of this theory. 

Saturday, June 2, 2012

Can Jaws Help Save Cancer Patients?

I have always been obsessed with sharks and while researching for a blog entry I remembered reading something years ago about sharks being linked cancer. It was the belief that shark cartilage or liver oil supplements were in fact the cure for cancer.









Kill Sonic Kill Cancer?



             Pancreatic cancer is a death sentence. It is quick to metastasize, hard to detect, and resistant to treatment. Following resection, radiation and chemotherapy are used to eradicate the remaining bits of the tumor that are left behind. These have not proven all that effective at leaving the patients cancer free. Pancreatic cancer is quite hard to access using chemotherapy due to its poor perfusion and desmoplastic (growth of fibrous or connective tissue) stroma. To add to confusion, the therapeutic window, the balance between toxicity and efficacy, of many chemotherapies is quite small. (The researchers refer to this as the “therapeutic index”). Additionally, chemotherapies have very short half-lives and often do not reach their desired target because of this. Researchers speculate that by increasing vasculature and preventing the accumlation of connective tissues in the stroma, chemotherapies would more easily reach and apoptose their targets.

Friday, June 1, 2012

Inside the Industry of Cancer: Pricey or Priceless?


My Photo of 1500 Owens St. San Francisco, CA 
Three months ago I had the unsuccessful, yet fortunate, opportunity to interview for an internship at C--- Corporation in San Francisco. Approaching the executive park I had no idea what to expect; perhaps white walls, white ceilings, lab coats- you know, like Willy Wonka, but super high tech, so maybe more like Area 51. As I approached the building with profusely perspiring palms and pits, I realized I might have misconstrued the rising biotech industry of the Bay. Yet, I was still shocked by the fourteen-story glass monolith before me, just a stone's throw from the Bay.

UV Radiation and Skin Cancer


Every time you expose your skin to sunlight, UV rays penetrate your skin. The more exposure, the higher the risk for the UV light to cause mutations. Have you ever wondered why this happens? How does UV light cause mutations? There are a lot of factors that contribute to the risk for skin cancer. In my previous blog I talked about indoor tanning, which is a voluntary exposure to UV rays but in this blog I want to talk about involuntary exposure. I also discuss how location/migration affect your risk.

A Genetic Disease That Virtually Guarantees You'll get Colon Cancer


FAP: A Disease that Virtually Guarentees you get cancer.

Imagine a disorder that virtually guaranteed you'd develop colon cancer not only within your lifetime, but early in it. One such disorder is Familial Adenomatous Polyposis (FAP), also known as Gardner's Syndrome. In the review article, Familial adenomatous polyposis, by Elizabeth Half, Dani Bercovich, and Paul Rozen, the specifics of this remarkable and deadly disorder are laid out.